Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs12286538 chr11:34963916 A/G 2.6E-12 525 42.27 26.22 3.67 KM Plot
KIRC rs12297124 chr12:132405433 G/T 1.88E-9 512 39.38 46.63 6.25 KM Plot
KIRC rs12369179 chr12:122963550 C/T 4.89E-9 527 39 45.93 5.12 KM Plot
KIRC rs12472552 chr2:6628645 C/T 1.99E-5 527 38.97 45.77 10.97 KM Plot
KIRC rs12482343 chr21:47604967 G/A 6.74E-5 513 40.8 37.9 3.33 KM Plot
KIRC rs12482934 chr21:47605335 C/T 5.5E-5 514 40.8 37.82 3.33 KM Plot
KIRC rs12495009 chr3:103231919 C/T 5.01E-5 527 41.27 29.28 30.75 KM Plot
KIRC rs12500369 chr4:147774636 A/C 2.01E-5 522 40 37.77 11.47 KM Plot
KIRC rs12524370 chr6:2379213 G/C 1.25E-8 524 40.5 39.17 12.07 KM Plot
KIRC rs12527017 chr6:165375846 A/C 3.43E-5 518 39.38 44.57 15.83 KM Plot
KIRC rs12529053 chr6:165389608 C/T 4.12E-5 523 39.38 41.53 15.83 KM Plot
KIRC rs12529088 chr6:2410033 C/T 2.47E-8 527 39.12 45.7 23.95 KM Plot
KIRC rs12600673 chr17:72632664 G/A 5.95E-5 509 38.1 42.75 34.22 KM Plot
KIRC rs12670666 chr7:46582925 A/T 7.46E-5 517 47.73 33.7 28.7 KM Plot
KIRC rs12674460 chr7:46582554 G/T 7.46E-5 517 47.73 33.7 28.7 KM Plot